1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGACAATGCTGGTCTGGATAGCGCTGATCTGATCTCTCAGCTCAGAGCAGAGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgctagtgcatatcagaagttgcatttacatttgttctaggggttggagctgatactaagacttcttccgcag
species | Oryza sativa |
transcript | LOC_Os05g48290.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88470574|gb|CI407845.1|CI407845
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|86435130|gb|CI106363.1|CI106363
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAACAAEST: gi|58678475|gb|CK067162.1|CK067162
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88518615|gb|CI446269.1|CI446269
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88227520|gb|CI227000.1|CI227000
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|86425528|gb|CI070625.1|CI070625
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88502433|gb|CI429939.1|CI429939
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88975323|gb|CI023574.1|CI023574
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88512866|gb|CI440372.1|CI440372
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88463068|gb|CI522179.1|CI522179
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88838596|gb|CI375144.1|CI375144
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|86534974|gb|CI175180.1|CI175180
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|88519136|gb|CI446790.1|CI446790
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|86251661|gb|CI016950.1|CI016950
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTTATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAAEST: gi|86427406|gb|CI072503.1|CI072503
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
EST: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGC GTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
genomic: AGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgc ... tcttccgcagGTTGGAGACATGGAAAAGCTGGGGATATCAGAGTCGTTTAAGGCGAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAATGCTGGTCTGGATAGCGCTGATCTGATCTCTCAGCTCAGAGCAGAGCATCACAAAGAGCAGAGCACTGCTGGAATTGATGTCATTTCTGGCGGCgtaagtttgctagtgcatatcagaagttgcatttacatttgttctaggggttggagctgatactaagacttcttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA