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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTAGAAGAGGCCCAGCGTGCCATTGATTCAGCTCATGTGGAAGCTTGCAGTGCTGAGAATGGAATAGGCTTAGTAAAACTGATGGGCCGTTATAGTGgtacgtattttagtattccttgccatctctctgagtgtaatgctgttatgtttcttccattgttgaccttgctgaaagcacctatcagtttaaaaattac...

Basic information

species Oryza sativa
transcript LOC_Os05g44922.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g44922.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G004932_T01 (Zea mays), 5'ss of exon 9
GCCGTAGAAGAGGCCCAGCGTGCCATTGATTCAGCTCATGTGGAAGCTTGCAGTGCTGAGAATGGAATAGGCTTAGTAAAACTGATGGGCCGTTATAGTGgtacgtattttagta--ttcc----------ttgccatctctctgagt-gtaatgctgttatgtttcttccattgttgaccttgctgaaagcacctatcagtttaaaaattac
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||  |  ||||           ||| || ||| ||  | |||||  | | ||| |   |   |   |    |||||||||   |||||||             
GCTGTGGAAGAGGCCCAGCGTGCCATTGATTCAGCTCATGTGGAAGCTTGCAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTGgttagtattctaacagattccatagagatgcctgctatatctttgcatagtaat--tttaatgatatctaggtgccttgagttgctgaaactgcctatcatg-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27576264|gb|CA998958.1|CA998958
EST:     CAGTGCTGAGAATGGAATAGGCTTAGTAAAACTGATGGGCCGTTATAGTG                         GGTTCATTGCAATGTATGCTACTCTTGCAAGTCGAGATGTGGACTGCTGC
genomic: CAGTGCTGAGAATGGAATAGGCTTAGTAAAACTGATGGGCCGTTATAGTGgtacgtattt ... catcttgcagGGTTCATTGCAATGTATGCTACTCTTGCAAGTCGAGATGTGGACTGCTGC