1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAgtgcgctctcttctatatgtacaatatctttattgctctcaactgtgtgcttaattattatcgtcatatgctctactttag
species | Oryza sativa |
transcript | LOC_Os05g43570.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAA GCACATCCATGGTTTAGAGGTCTCCCAEST: gi|86827108|gb|CI270824.1|CI270824
genomic: TATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAgtgcgctctc ... tctactttagGCACATCCATGGTTTAGAGGTCTCCCA
EST: TATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAA GCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAAEST: gi|29623780|gb|CB628791.1|CB628791
genomic: TATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAgtgcgctctc ... tctactttagGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAA
EST: TATGTAATGTTGAGCAGAGACTT-GAACAAAAGGAGCCCATGAGATAAAA GCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAA
genomic: TATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAgtgcgctctc ... tctactttagGCACATCCATGGTTTAGAGGTCTCCCATGGGAAAGATTGTATCAGATGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGAGACTTGGAACAAAAGGAGCCCATGAGATAAAAgtgcgctctcttctatatgtacaatatctttattgctctcaactgtgtgcttaattattatcgtcatatgctctactttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG