1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTCATATAATCTTCTGTGTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGCgtgagtctcccctattctttttcttgtgtgcattctgcctgagatgtcatgtaggccgtaaagttgtaaacgacactagatgtgaggaactacaaaattt...
species | Oryza sativa |
transcript | LOC_Os05g42330.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGC TGGGATTTTGNCTGCCATTTGATGTCATAGGCAGGAGTGCTATAGTGGGGAEST: gi|33803682|gb|CF327716.1|CF327716
genomic: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGCgtgagtctcc ... ttgttactagTGGGATTTTGCCTGCCATT-GATGTCATAGGCAGGAGTGCTATAGTGGGGA
EST: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGC TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGEST: gi|58686999|gb|CK075686.1|CK075686
genomic: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGCgtgagtctcc ... ttgttactagTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG
EST: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATC-TTGGC TGGGA-TTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGEST: gi|4881016|gb|AU065315.1|AU065315
genomic: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGCgtgagtctcc ... ttgttactagTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG
EST: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGC TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG
genomic: GTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGCgtgagtctcc ... ttgttactagTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCATATAATCTTCTGTGTGTGGGCAGCTGTGGCTCCTCCTTTTCCTTTCAAAGGAAAATCTTTGGCgtgagtctcccctattctttttcttgtgtgcattctgcctgagatgtcatgtaggccgtaaagttgtaaacgacactagatgtgaggaactacaaaattt
- - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccct