1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccattacactagttaaaagttagtgatgccatgcttgtattgtgccttttttaaagtcatcctgtgcgtgcag
species | Oryza sativa |
transcript | LOC_Os05g38710.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAG GGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTAEST: gi|87014113|gb|CI273303.1|CI273303
genomic: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
EST: AAAAGGG-AAATCTTGATCATCAACCC-AAG GGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTAEST: gi|29646340|gb|CB651347.1|CB651347
genomic: AAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
EST: ATCATCAACCCAAGG GGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTAEST: gi|29680256|gb|CB676531.1|CB676531
genomic: ATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
EST: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAG GGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTAEST: gi|86872078|gb|CI333239.1|CI333239
genomic: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
EST: AAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAAGCCCAAAGG GGGGAAGTAGGCCATAAACAGGTTCTGTCGACGTGAAGTCCTATACCTCCEST: gi|27921319|gb|CB097127.1|CB097127
genomic: AAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAA-CCCAAA-Ggtatggccat ... gtgcgtgcagGGGGAAGTA-GCCATAAACA-GTTCTGTCGACGTGAAGTCCTATACCTCC
EST: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCGTCAACCCAAAG GGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTAEST: gi|86595618|gb|CI272594.1|CI272594
genomic: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
EST: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAG GGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTAEST: gi|58681129|gb|CK069816.1|CK069816
genomic: ACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
EST: AGGGAAAATCTTTATCATCAACCCAAAG GGGTAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
genomic: AGGGAAAATCTTTATCATCAACCCAAAGgtatggccat ... gtgcgtgcagGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccattacactagttaaaagttagtgatgccatgcttgtattgtgccttttttaaagtcatcctgtgcgtgcag
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