1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaataaaatctttagattatttatttcaacttttatttggcctgtgatttctggttgaatagggtcattcaggctgtcagctgcattagattgag...
species | Oryza sativa |
transcript | LOC_Os05g36070.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTG GTATATTTGTGGCACTTGCGCTGCGTTTCGATGTCTCAAGAGGAATTAAGAEST: gi|8859158|gb|AU096476.1|AU096476
genomic: TTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttggttccagGTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGA
EST: TGCTGCACG-CCGTTCTCTATGCTTGGCCTTGGTGACATTGTAANACCTG GTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGAEST: gi|29628338|gb|CB633349.1|CB633349
genomic: TGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttggttccagGTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGA
EST: TGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTG GTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGAEST: gi|29628337|gb|CB633348.1|CB633348
genomic: TGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttggttccagGTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGA
EST: TGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTG GTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGAEST: gi|88840958|gb|CI000920.1|CI000920
genomic: TGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttggttccagGTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGA
EST: CATTGTAATACCTG GTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGA
genomic: CATTGTAATACCTGgttagtaata ... ttggttccagGTATATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaataaaatctttagattatttatttcaacttttatttggcctgtgatttctggttgaatagggtcattcaggctgtcagctgcattagattgag
- - - - - - - - - - TGCTGC