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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattgactttctattttttttccatgctctttcaccaaattgttgattgttggttagcagaaatcaaaatggactgtaggctgcagttgctgcttt...

Basic information

species Oryza sativa
transcript LOC_Os05g24550.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 8
TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattgactttctattttttttccatgctctttcaccaaattgttgattg---ttggttagcagaaa--tcaaaatggactgtaggctgcagttgctgcttt
||||||  |  |||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||   |  |  | ||    || |  || | |||     ||  ||||  |  |   |||  |||| || |  | |  | ||||| | || ||||| | |||||  
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgct----ttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgttatgaaggactatggggtgcagatactgcta-

upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G108849_T01 (Zea mays), 5'ss of exon 7
TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattgactttctattttttttccatgctctttcaccaaattgttgattg---ttggttagcagaaa--tcaaaatggactgtaggctgcagttgctgcttt------------------------------------------------------------
||||||  |  |||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||   |  |  | ||    || |  || | |||     ||  ||||  |  |   |||  |||| || |  | |  | ||||| | || ||||| | |||||                                                              
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgct----ttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgttatgaaggactatggggtgcagatactgctagtacttttagaggacaaacattccatacaaaaacttacaaagactattatctaaataaaag

upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA19G41120.1 (Glycine max), 5'ss of exon 8
TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattgactttc---tattttttttccat-gctctttcaccaaattgttgattgttggttagcagaaatcaaaatggactgtaggctgcagttgctgcttt
 |  |||||||||||||||||||| |  |||||||| ||||| || ||| | || || ||| | ||||| || || |||||||| ||||| ||||||||||||      ||| |     | | |||| | ||   | ||||  ||| ||  |  ||||   ||     ||| | |||   |   ||   |  | ||  |  || 
CTATAGTGTCAATGCATACAGAGTGAGCTCTGATCCCCATGATATCATGACGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTCACTGTTTATGAGgtaaatgaaactcttacacactcttttgcgattaatttttctgcaacttcct--ttgtcaatttctgaaaacccaaaaccatcctat-ttaaaatttataatt-

upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA03G38520.1 (Glycine max), 5'ss of exon 8
TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtac-cattgacttt---ctattttttttccatgctctttcaccaaattgttgattgttggttagcagaaatcaaaatggactgtaggctgcagttgctgcttt
 |  ||||| | |||||||||||| || |||||||| ||||| || ||||| || || ||| | ||||| || || |||||||| || |||||||||||||||       ||| |   | | | | || | ||    ||| |   || | |  || ||   ||     ||| | |||   |   ||   |  | ||  |  |  
CTATAGTGTTAGTGCATACAGAGTCAACTCTGATCCCCATGATATCATGGCGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGgtaaatgaaaactcttacccactctattgcgataaatttttatgcaact-tccatggtcaatttctgaaaacccaaaaccatcctat-ttaaaatttataat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33653560|gb|CF276174.1|CF276174
EST:     TGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: TGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86528550|gb|CI168756.1|CI168756
EST:     ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACAGTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|38469357|gb|CF953488.1|CF953488
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29689542|gb|CB685817.1|CB685817
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86431204|gb|CI083627.1|CI083627
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86537269|gb|CI177475.1|CI177475
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86869490|gb|CI346350.1|CI346350
EST:     TTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: TTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|94362581|gb|CI052700.1|CI052700
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86853597|gb|CI330448.1|CI330448
EST:     GTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: GTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|87022144|gb|CI259216.1|CI259216
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86535655|gb|CI175861.1|CI175861
EST:     AGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: AGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86878292|gb|CI319571.1|CI319571
EST:     TGCTTTCACCGTTTATGA-                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: TGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86433995|gb|CI094338.1|CI094338
EST:     CCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88216143|gb|CI215992.1|CI215992
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88833829|gb|CI077310.1|CI077310
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86870930|gb|CI326751.1|CI326751
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|33656188|gb|CF278802.1|CF278802
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|89193799|gb|CI018117.1|CI018117
EST:     CAGAGGTCTACCGAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29658207|gb|CB654482.1|CB654482
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86540276|gb|CI180482.1|CI180482
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86887633|gb|CI311916.1|CI311916
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|58031395|gb|CX728938.1|CX728938
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88250173|gb|CI250450.1|CI250450
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86427759|gb|CI072856.1|CI072856
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86843379|gb|CI341454.1|CI341454
EST:     TTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: TTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|89198824|gb|CI003561.1|CI003561
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAACCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29686790|gb|CB683065.1|CB683065
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86430781|gb|CI083204.1|CI083204
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88987851|gb|CI017940.1|CI017940
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86251465|gb|CI055598.1|CI055598
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86528070|gb|CI168276.1|CI168276
EST:     CAGAGGTCTACCCAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29639549|gb|CB644558.1|CB644558
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86884529|gb|CI337097.1|CI337097
EST:     TCACCGTTTATGAG                         GATTTTCCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: TCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|29640250|gb|CB645259.1|CB645259
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|58609130|gb|CK037163.1|CK037163
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86528093|gb|CI168299.1|CI168299
EST:     ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: ACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88986013|gb|CI033342.1|CI033342
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|33654657|gb|CF277271.1|CF277271
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|58610249|gb|CK038121.1|CK038121
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|86428106|gb|CI073203.1|CI073203
EST:     CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|18388303|gb|BM421501.1|BM421501
EST:     GGCCCTGTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: GGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88830222|gb|CI076478.1|CI076478
EST:     GTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: GTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
EST: gi|88966702|gb|CI365925.1|CI365925
EST:     CAGAGGTCTACCAAAATGGCCCTCTAGAAGTTGCTTTCACCGTTTATGAG                         GATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG
genomic: CAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattga ... cattgtgaagGATTTTGCACACTACAAATCAGGAGTATACAAGCACATCACAGGTGGCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattgactttctattttttttccatgctctttcaccaaattgttgattgttggttagcagaaatcaaaatggactgtaggctgcagttgctgcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT