1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
TCTGCAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgctttctgtacagtatttttgcaactctatcatattccttcaattcaaagtttcgatttcatcccagatattgtagttcaaaaatgtacgtt...
species | Oryza sativa |
transcript | LOC_Os05g07130.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAG GTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATEST: gi|58695801|gb|CK084488.1|CK084488
genomic: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgc ... ttttttccagGTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCAT
EST: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAG GTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATGGGGGAGGAEST: gi|84117327|gb|CD151094.1|CD151094
genomic: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgc ... ttttttccagGTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATGGGGGAGGA
EST: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGTAATGAG GTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATGGGGGAGGAEST: gi|58688458|gb|CK077145.1|CK077145
genomic: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgc ... ttttttccagGTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATGGGGGAGGA
EST: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGTAATGAG GTGGCTGCTTTAGCTATGGAGGACATGATAGEST: gi|29612781|gb|CB617794.1|CB617794
genomic: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgc ... ttttttccagGTGGCTGCTTTAGCTATGGAGGACATGATAG
EST: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAG GTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATGGGGGAGGA
genomic: CAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgc ... ttttttccagGTGGCTGCTTTAGCTATGGAGGACATGATAGATTGGATGCATGGGGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGCAATGAGgttagcatgctttctgtacagtatttttgcaactctatcatattccttcaattcaaagtttcgatttcatcccagatattgtagttcaaaaatgtacgtt
- - - - - - - - - - - - - - CTGAAG