1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTAGATGGCCGGCCGATGAGTGGCGACATAGGCCGAGGTGCAACGAGGGAAACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTGgtaaacaaagtcaatctttagaaaaaaaaaaactcgttatggctttgttatcatccacatttctaagtattttctaataatatggttttgaag
species | Oryza sativa |
transcript | LOC_Os05g06510.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTG GCTTCTATCAGTTGGCTGGTGGCACCAACTCATACACCATAGAATCCCTAAEST: gi|29667169|gb|CB663444.1|CB663444
genomic: AACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTGgtaaacaaag ... ggttttgaagGCTTCTATCAGTTGGCTGGTGGCACCAACTCATACACCATAGAATCCCTAA
EST: AACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTG GCTTCTATCAGTTGGCTGGTGGCACCAACTCATACACCATAGAATCCCTAAEST: gi|29661373|gb|CB657648.1|CB657648
genomic: AACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTGgtaaacaaag ... ggttttgaagGCTTCTATCAGTTGGCTGGTGGCACCAACTCATACACCATAGAATCCCTAA
EST: AACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTG GCTTCTATCAGTTGGCTGGTGGCACCAACTCATACACCATAGAATCCCTAA
genomic: AACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTGgtaaacaaag ... ggttttgaagGCTTCTATCAGTTGGCTGGTGGCACCAACTCATACACCATAGAATCCCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGATGGCCGGCCGATGAGTGGCGACATAGGCCGAGGTGCAACGAGGGAAACAGTATCCTTTGCTGTTCATTTGTCTTCAATGTCAAATAGGCCTCCTGgtaaacaaagtcaatctttagaaaaaaaaaaactcgttatggctttgttatcatccacatttctaagtattttctaataatatggttttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT