1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaattttcatctctgtttttaaattttgttatgtaggtttggcatcgtcactgtgtgaatttaaccattttgctaaag
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCC-A -A-GTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|58675064|gb|CK063751.1|CK063751
genomic: AATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA --G-TACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAEST: gi|58683615|gb|CK072302.1|CK072302
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGA
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA --G-TACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|163927756|gb|EG710536.1|EG710536
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA --G-TACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|27577494|gb|CB000189.1|CB000189
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA CAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|3768455|gb|AU032482.1|AU032482
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCC-A -A-GTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|58672427|gb|CK061113.1|CK061113
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCC-A -A-GTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|58676547|gb|CK065234.1|CK065234
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA --G-TACGGAAAGATCTATGTGAACTCTGCAAAGAEST: gi|86513133|gb|CI155766.1|CI155766
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGA
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCA- --GGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|58690891|gb|CK079578.1|CK079578
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA --G-TACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAEST: gi|163925853|gb|EG714953.1|EG714953
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGA
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAA CAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGEST: gi|11026410|gb|AU163011.1|AU163011
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
EST: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCC-A -A-GTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
genomic: CTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt ... tttgctaaagCAGGTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaattttcatctctgtttttaaattttgttatgtaggtttggcatcgtcactgtgtgaatttaaccattttgctaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC