1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAGgtaaattatatcttgcttccatcgaaatcactccctttttgttgtttacctcctacttaactgactattctctcag
species | Oryza sativa |
transcript | LOC_Os05g04340.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAG GTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACEST: gi|58671594|gb|CK060280.1|CK060280
genomic: CTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAGgtaaattata ... attctctcagGTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTAC
EST: CTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAG GTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACEST: gi|66928190|gb|CX115038.1|CX115038
genomic: CTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAGgtaaattata ... attctctcagGTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTAC
EST: CTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAC GTTCTGGGTACCCCTACACGAG
genomic: CTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAGgtaaattata ... attctctcagGTTCTGGGTACCCCTACACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTATTCCCTGGCGACAGTGGCGTTGATCAGCTTGTTGAAATCATCAAGgtaaattatatcttgcttccatcgaaatcactccctttttgttgtttacctcctacttaactgactattctctcag
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