1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGTCTAGTTTGCCAAGCTCTAATGGTGTATTAAAATACCTTGCTGGAAAGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaactattgcagcagctaattttaattgagtgagcttaaatttctctactatattgttttcttttcaattgctttatcttattttggattaaatccttgcag
species | Oryza sativa |
transcript | LOC_Os05g01470.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTTEST: gi|58607865|gb|CK035898.1|CK035898
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
EST: CTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTTEST: gi|33798829|gb|CF325271.1|CF325271
genomic: CTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTTEST: gi|33675097|gb|CF303336.1|CF303336
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
EST: GACCCTACCTTCCCATGCAGCTATTACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTTEST: gi|33675151|gb|CF303390.1|CF303390
genomic: GACCCTACCTTCCCATGCAGCTAT-ACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAC GTTTATTCTGATCEST: gi|33674758|gb|CF302997.1|CF302997
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATC
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTTEST: gi|58609748|gb|CK037781.1|CK037781
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTTEST: gi|4715491|gb|AU056608.1|AU056608
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGGAAGATGCAGCTGTEST: gi|11442586|gb|BF430489.1|BF430489
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTG-AAGATGCAGCTGT
EST: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAG GTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
genomic: AGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaa ... atccttgcagGTTTATTCTGATCTGGAGGTTGCTTTTGCCATTTCTGAAGATGCAGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCTAGTTTGCCAAGCTCTAATGGTGTATTAAAATACCTTGCTGGAAAGACCCTACCTTCCCATGCAGCTATACTATGCGGTTTAGTAAAGAATCAGgtgcctgtaactattgcagcagctaattttaattgagtgagcttaaatttctctactatattgttttcttttcaattgctttatcttattttggattaaatccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA