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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAATTATATGAAGCTTTTCTTAACAGTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGgtaagcatcaccttcaaagtttttatctgtgctgattttgtttgcttttatatgttgtcagcattgtttagacctttatgttctttccatttccttatca...

Basic information

species Oryza sativa
transcript LOC_Os04g59624.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678103|gb|CF306342.1|CF306342
EST:     GTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACG                         ATATTGAAGAAAATATGTGATCATCCGCTGTTGTTGACTA
genomic: GTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGgtaagcatca ... tcttaaacagATATTGAAGAAAATATGTGATCATCCGCTGTTGTTGACTA
EST: gi|58680097|gb|CK068784.1|CK068784
EST:     GTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACG                         ATATTGAAGAAAATATGTGATCATCCGCTGTTGTTGACTAAGAAAGCTGCT
genomic: GTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGgtaagcatca ... tcttaaacagATATTGAAGAAAATATGTGATCATCCGCTGTTGTTGACTAAGAAAGCTGCT