1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCTCCTCTTGCTGAAGCTTGTTCCAGAAAGGATCTGACAGCAATACATGAAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttttttttcccctcttctttactttctttagggtttgacatcattgccagtatgatttgtgtggtcttttcgtgagaatctttgtttgtatgt...
species | Oryza sativa |
transcript | LOC_Os04g58750.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|88724708|gb|CI747967.1|CI747967
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|33796952|gb|CF324339.1|CF324339
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|33675770|gb|CF304009.1|CF304009
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|29636566|gb|CB641575.1|CB641575
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|88725714|gb|CI748973.1|CI748973
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|33679197|gb|CF307436.1|CF307436
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAGEST: gi|58603429|gb|CK013957.1|CK013957
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
EST: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAG CTCTCATTTCAGATGTGGACCAATCAAATGCCAGATACATTGAACTCCAAG
genomic: AAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttt ... tttgctgcagCTCTCATTTCAGATGTGGACCAATCAAATGCAAGATACATTGAACTCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCCTCTTGCTGAAGCTTGTTCCAGAAAGGATCTGACAGCAATACATGAAATCCTAGAAAAGACGGGCTACAAGGATGATGAGGGAACAGCAAATGAGgttttagttttttttcccctcttctttactttctttagggtttgacatcattgccagtatgatttgtgtggtcttttcgtgagaatctttgtttgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc