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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttacggtgtttttctattttatactttgtttttagttaagctttaccttttcgtttcttcccatctgtccaaagaggataagcacatagaaaagcactgtatacgtgctcattattattatgtttcaatttgcag

Basic information

species Oryza sativa
transcript LOC_Os04g52690.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52690.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G445617_T02 (Zea mays), 5'ss of exon 9
-------------TTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttacggtgtttttctattttatactttgtttttagttaagctttaccttttcgtttcttcccatctgtccaaagaggataagcac-atagaaaagcactgta-tacgtgctcattattattatgtttcaatttgcag
             || |||||| |||| |||||||| ||||||||||||||| | ||||| |||||||||||| | ||||||||||| || ||||||||||| |||||     | ||   |            |  || | ||    |||    ||| | | |     |   || ||   || | || ||  |||  | | | ||  | ||  ||  | ||    || |              
CTTGATATTTCAGTTGCCTCTGATGTACAAGCACCTGTTTTCTTCTAAATTGCGCAAGCGATCAGGTGTCCTGCTATATGGACCTCCAGGAACAGGGAAGgtaggtttgaaaaggttccat----------ccggattcaattgtatttt--tgtttagctaccaataacaagtgcatccagaagaaacatgatacgagatcgctaaaataattgtcccttggacttctag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675898|gb|CB672173.1|CB672173
EST:     TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG                         ACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
genomic: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttac ... caatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
EST: gi|58674677|gb|CK063364.1|CK063364
EST:     TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG                         ACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
genomic: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttac ... caatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
EST: gi|27576352|gb|CA999046.1|CA999046
EST:     TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG                         ACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
genomic: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttac ... caatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT