1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACACGCCAGAAATCAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatttttctcgcacttgaacaccctcctttcccttcttttcatgcttcattttttccctactgaatctgtttttttaatctaataaatgcgtta...
species | Oryza sativa |
transcript | LOC_Os04g48770.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88384408|gb|CI551334.1|CI551334
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88322741|gb|CI545447.1|CI545447
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88901899|gb|CI374507.1|CI374507
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88262709|gb|CI366483.1|CI366483
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTGGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAATAAGTACGAGCCCAAGTTCCAAEST: gi|88458008|gb|CI542190.1|CI542190
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88220249|gb|CI219809.1|CI219809
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88283293|gb|CI404739.1|CI404739
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCCCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|3767687|gb|AU031714.1|AU031714
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGANCCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88553286|gb|CI483386.1|CI483386
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|86428411|gb|CI075092.1|CI075092
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGTCCAAGTTCCAAEST: gi|88506412|gb|CI433918.1|CI433918
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88323941|gb|CI561350.1|CI561350
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88477541|gb|CI414812.1|CI414812
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|11173107|gb|AU164616.1|AU164616
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88515464|gb|CI443118.1|CI443118
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88273589|gb|CI393995.1|CI393995
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88271529|gb|CI387582.1|CI387582
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|86887294|gb|CI313197.1|CI313197
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|86542948|gb|CI183154.1|CI183154
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88971722|gb|CI388966.1|CI388966
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCCCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88549192|gb|CI479056.1|CI479056
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|56158328|gb|C98801.2|C98801
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: G-AAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88226010|gb|CI225926.1|CI225926
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88384300|gb|CI551226.1|CI551226
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88437316|gb|CI528675.1|CI528675
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|86498019|gb|CI140652.1|CI140652
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|86868122|gb|CI331873.1|CI331873
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|86430668|gb|CI083091.1|CI083091
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88502106|gb|CI429612.1|CI429612
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAEST: gi|88832890|gb|CI369780.1|CI369780
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
EST: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAG GCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
genomic: GAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatt ... ttgtgaacagGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACACGCCAGAAATCAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGgtattacatttttctcgcacttgaacaccctcctttcccttcttttcatgcttcattttttccctactgaatctgtttttttaatctaataaatgcgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC