1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGCTGCTGCAGTTTACACAGCACAATGTGCTCTCACTCGTTGCCAGCAGTGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagcacttcgccttcgcattccctgcctgcgtttacaagcatttatgtcttcagatgtatggtgatcatacttgagctgatcatatttctttctcttgttctccttttcag
species | Oryza sativa |
transcript | LOC_Os04g47580.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|86493911|gb|CI136544.1|CI136544
genomic: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|86431388|gb|CI084999.1|CI084999
genomic: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: ACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|33805658|gb|CF328707.1|CF328707
genomic: ACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|86255461|gb|CI065138.1|CI065138
genomic: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|89195453|gb|CI051566.1|CI051566
genomic: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|86485412|gb|CI128045.1|CI128045
genomic: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAEST: gi|88228558|gb|CI228038.1|CI228038
genomic: TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
EST: ACATAGTAGATATACCGGAGAGCAGCTTCT TGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
genomic: ACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagca ... tccttttcagTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTGCTGCAGTTTACACAGCACAATGTGCTCTCACTCGTTGCCAGCAGTGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTgtaagtagcacttcgccttcgcattccctgcctgcgtttacaagcatttatgtcttcagatgtatggtgatcatacttgagctgatcatatttctttctcttgttctccttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT