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GTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttctattttttatggttattttgaatttgtgatgtgctgcaaattacactatgtgatgggttttggttgtcaatattcgatgtagatgcagccct...
species | Oryza sativa |
transcript | LOC_Os04g41910.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG GTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCEST: gi|58592254|gb|CF990562.1|CF990562
genomic: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttcta ... ctgctattagGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGC
EST: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG GTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATATTGAGGCEST: gi|29616209|gb|CB621221.1|CB621221
genomic: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttcta ... ctgctattagGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGC
EST: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG GTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCEST: gi|29636734|gb|CB641743.1|CB641743
genomic: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttcta ... ctgctattagGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGC
EST: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG GTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCEST: gi|29676261|gb|CB672536.1|CB672536
genomic: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttcta ... ctgctattagGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGC
EST: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG GTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGC
genomic: GCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttcta ... ctgctattagGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGgtaagttctattttttatggttattttgaatttgtgatgtgctgcaaattacactatgtgatgggttttggttgtcaatattcgatgtagatgcagccct
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG