1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagccatgagacacttccaaatgagcaccaagctgtaccgacaatctggcattccctgatttcttctgcgctgactcctcccttacgatgctgtag
species | Oryza sativa |
transcript | LOC_Os04g39270.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|325494562|gb|JG459086.1|JG459086
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT TEST: gi|325494562|gb|JG459086.1|JG459086
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtag-
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT TEST: gi|4714825|gb|AU055942.1|AU055942
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtag-
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|29616384|gb|CB621396.1|CB621396
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|4714826|gb|AU055943.1|AU055943
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|88986358|gb|CI033589.1|CI033589
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCCAAGCCATCEST: gi|86850836|gb|CI338812.1|CI338812
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|66930116|gb|CX116964.1|CX116964
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: CGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|29663297|gb|CB659572.1|CB659572
genomic: CGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCEST: gi|86849316|gb|CI297783.1|CI297783
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCEST: gi|29615583|gb|CB620595.1|CB620595
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGC
EST: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT GTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
genomic: TGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagc ... gatgctgtagGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCTgtaagtgagccatgagacacttccaaatgagcaccaagctgtaccgacaatctggcattccctgatttcttctgcgctgactcctcccttacgatgctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG