1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGCAATCGAAAGCACTCAAGGTTAGTTGCAAGCTCAACAATGCTGCTTGCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacgagttcttggtgtttgtcttgttaatgtagaggttcttaactgacaatgtaaaaacaagagtaaaatacaccagcggtccttaaacttgtc...
species | Oryza sativa |
transcript | LOC_Os04g28420.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAACTGAAGCTGAAGGAATACAGTGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|86506588|gb|CI149221.1|CI149221
genomic: CAAACTGAAGCTGAAGGAATACAG-GGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: TCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|89163178|gb|CI100068.1|CI100068
genomic: TCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|218488949|gb|FG960628.1|FG960628
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|86485367|gb|CI128000.1|CI128000
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|89181155|gb|CI045238.1|CI045238
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|88569754|gb|CI660929.1|CI660929
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|88849661|gb|CI089767.1|CI089767
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|86427218|gb|CI072315.1|CI072315
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAGEST: gi|8527213|gb|AU092028.1|AU092028
genomic: GCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
EST: CAAACTGAAGCTGAAGGAATACCAGGGAAGCAGAGAAGCTCTGCACCAAG GTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
genomic: CAAACTGAAGCTGAAGGAATA-CAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacg ... tgctgtgcagGTTTTGGAACTGGAGAGCACAAATGTAAAGGCCTTGTACAGAAGGACGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCAATCGAAAGCACTCAAGGTTAGTTGCAAGCTCAACAATGCTGCTTGCAAACTGAAGCTGAAGGAATACAGGGAAGCAGAGAAGCTCTGCACCAAGgtactgtacgagttcttggtgtttgtcttgttaatgtagaggttcttaactgacaatgtaaaaacaagagtaaaatacaccagcggtccttaaacttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC