1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCTATTTTTCTAATCCAGAGAAACAGGCATGCTTTAATTGGAAGGGCTATTGATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCGgtgaaaatttgtggatatccttattccatatcgcacactggatctatgttatggagctgattttcttgcatcatgcag
species | Oryza sativa |
transcript | LOC_Os04g23180.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGAAGGCTGATCCG GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCEST: gi|8334730|gb|BE039714.1|BE039714
genomic: TGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
EST: AGTTTCTGAAGGCTGATCCG GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCEST: gi|29613518|gb|CB618531.1|CB618531
genomic: AGTTTCTGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
EST: TTGATGATCATGACATGCAGTGTGTTCTTGAGTTTCTGAAGGCTGATCCG GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCEST: gi|86434642|gb|CI105875.1|CI105875
genomic: TTGATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
EST: ATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCG GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCEST: gi|4716435|gb|AU057551.1|AU057551
genomic: ATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
EST: TTTCTGAAGGCTGATCCG GTTGTAGATGCTCTTTATNATTGCAAAANTGAGGTGATTGGACCAGGATTCEST: gi|9865445|gb|AU101195.1|AU101195
genomic: TTTCTGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
EST: TGATGATCATGACATGCCAGCGTGTCCTTGAGTTTCTGAAGNCTGATCCG GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCEST: gi|86494278|gb|CI136911.1|CI136911
genomic: TGATGATCATGACATG-CAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
EST: TTGATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCG GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
genomic: TTGATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCGgtgaaaattt ... catcatgcagGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTATTTTTCTAATCCAGAGAAACAGGCATGCTTTAATTGGAAGGGCTATTGATGATCATGACATGCAGCGTGTTCTTGAGTTTCTGAAGGCTGATCCGgtgaaaatttgtggatatccttattccatatcgcacactggatctatgttatggagctgattttcttgcatcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT