1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGATCCTCTCAAGCATCAAGATGCATTTGAACGAACTGAAGAACTACACTTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGgtgagcggataagtttgtttatcgtgacatgcaatcgggaccgaaatctttccaacttctaacgtttctccttgattttcag
species | Oryza sativa |
transcript | LOC_Os04g12480.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAG AAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAAEST: gi|88283861|gb|CI405307.1|CI405307
genomic: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGgtgagcggat ... tgattttcagAAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAA
EST: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAG AAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCACCAGTCACTAAEST: gi|86863336|gb|CI344982.1|CI344982
genomic: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGgtgagcggat ... tgattttcagAAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAA
EST: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAG AAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAAEST: gi|88488819|gb|CI426090.1|CI426090
genomic: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGgtgagcggat ... tgattttcagAAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAA
EST: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAG AAAACCGAGTNCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAA
genomic: TTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGgtgagcggat ... tgattttcagAAAACCGAGTGCGGATGGGGTCCAAGACTAGCCAATGTCAGCAGTCACTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATCCTCTCAAGCATCAAGATGCATTTGAACGAACTGAAGAACTACACTTTCGGGAAGCATATAGTTGCGCGTGTGGAGAAGTTAATCATTACAGGAGgtgagcggataagtttgtttatcgtgacatgcaatcgggaccgaaatctttccaacttctaacgtttctccttgattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT