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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATATGCATAATAATGCATTTTACGCGGAAGAAAAACTTTTGAAATCTGAACTCCAGGCCATGCGTGATTGTCACCCTTCATCTGCACGTTATTGGATTgtaagaatttgtgagagaagcactgtatcgttcttttataattcactagctactgtgcattgtaattagtggatttcccgtgcaattttgtgtggagcta...

Basic information

species Oryza sativa
transcript LOC_Os04g04950.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 9
TAATATGCATAATAATGCATTTTACGCGGAAGAAAAACTTTTGAAATCTGAACTCCAGGCCATGCGTGATTGTCACCCTTCATCTGCACGTTATTGGATTgtaagaatttgtgaga---gaagcactgtatcgttcttttataattcact-agctactgtgcattgtaattagtggatttcccgtgcaattttgtgtggagcta
|||| | ||||| ||||||||||| || |||||||||||  | ||||| ||| |  | || |||||||||||| |||||| |||||| ||| | |||||||||||   ||         ||| | |  | ||        | ||   | | || || |     || |   | |  || |     |||  |    |||  |    
TAATGTTCATAACAATGCATTTTATGCTGAAGAAAAACTGCTTAAATCAGAAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTgtaagttcttactgattttgaaaccccctctccccaggaaaaaaaatattcagatattaatttttttccctgggtgaatatttctgctgtcac-tgtccac---

upper sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
TAATATGCATAATAATGCATTTTACGCGGAAGAAAAACTTTTGAAATCTGAACTCCAGGCCATGCGTGATTGTCACCCTTCATCTGCACGTTATTGGATTgtaagaatttgtgagagaagcactgtatcgttcttttataat-tcactagctactgtgcattgtaattagtggatttcccgtg--caattttgtgtggagcta---
|||| |||| |||||||||||||| || |||||||||||  | | ||||||| | || || |||||||||||| | || |  ||||| ||  |||||||||||||   |  |       || |||  ||  |  |||||||  |   |   || | ||  ||||   ||    || |   |||       ||||       |    
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatcct------tgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa