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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttctcccctttttctttcaggaaatgataatttatgtattctgttttggtgatttgttgttgtttctcctattgaactccttttatttttgtag

Basic information

species Oryza sativa
transcript LOC_Os03g63020.4
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613120|gb|CB618133.1|CB618133
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29644979|gb|CB649986.1|CB649986
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29663527|gb|CB659802.1|CB659802
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|34996388|gb|CF569133.1|CF569133
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29666009|gb|CB662284.1|CB662284
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29666008|gb|CB662283.1|CB662283
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29638287|gb|CB643296.1|CB643296
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29656192|gb|CB652467.1|CB652467
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29613155|gb|CB618168.1|CB618168
EST:     CACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|33381337|gb|CF196680.1|CF196680
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|218497584|gb|FG955131.1|FG955131
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29613395|gb|CB618408.1|CB618408
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
EST: gi|29628841|gb|CB633852.1|CB633852
EST:     CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTA                         GACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG
genomic: CTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAgtgagtttct ... atttttgtagGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTG