1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGgcaagttcaaacccgtttcttttgtgggttctaactgattgtgtatatatttttggttgtctatctatatctaaacatacccttacctttggcagtctat...
species | Oryza sativa |
transcript | LOC_Os03g61050.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCGTTATCCCACAG CGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCEST: gi|58677868|gb|CK066555.1|CK066555
genomic: AGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTC-TTATCCCACAGgcaagttcaa ... atgatgacagCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTC
EST: CAGGGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAG CGCCCTACTGTTGGTGATGTEST: gi|426223|gb|D22085.1|D22085
genomic: CAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGgcaagttcaa ... atgatgacagCGCCCTACTGTTGGTGATGT
EST: CAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAG CGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCEST: gi|29616172|gb|CB621184.1|CB621184
genomic: CAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGgcaagttcaa ... atgatgacagCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTC
EST: CAGGGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAG CGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTC
genomic: CAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGgcaagttcaa ... atgatgacagCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGgcaagttcaaacccgtttcttttgtgggttctaactgattgtgtatatatttttggttgtctatctatatctaaacatacccttacctttggcagtctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA