1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGTAGTGACTACCACTACTCACAAGTCACTCCGTGGACCACGTGGAGCCATGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatacttgagcagaacaatagcaagatagtagcgtagggtgttggtactgtttcttctccatcctgtgactctgtgagcttcaaaaaaataaaaatgcctaatgaccctctaccgtctag
species | Oryza sativa |
transcript | LOC_Os03g52840.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|58691302|gb|CK079989.1|CK079989
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|58691585|gb|CK080272.1|CK080272
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGEST: gi|38479794|gb|CF963883.1|CF963883
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAACTGCTGCTGTCTTCCCAGGTCTEST: gi|29672938|gb|CB669213.1|CB669213
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAA-TGCTGCTGTCTTCCCAGGTCT
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|24468780|gb|CA305729.1|CA305729
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|38472528|gb|CF956660.1|CF956660
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTEST: gi|4716856|gb|AU057972.1|AU057972
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCT
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|38474897|gb|CF959030.1|CF959030
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: ATCTTGTTAGCAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATAGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTEST: gi|13420583|gb|AU174673.1|AU174673
genomic: ATCTT-TTA-CAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTAT-GACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCT
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|11442748|gb|BF430651.1|BF430651
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|29629705|gb|CB634714.1|CB634714
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|33663440|gb|CF294407.1|CF294407
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: GAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|58692040|gb|CK080727.1|CK080727
genomic: GAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGAAAGGAGT-AACAAGCAA-GCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|29681405|gb|CB677680.1|CB677680
genomic: TGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|29681406|gb|CB677681.1|CB677681
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|14571290|gb|BI118658.1|BI118658
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|55411163|gb|CV723539.1|CV723539
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|38478032|gb|CF962165.1|CF962165
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|29674038|gb|CB670313.1|CB670313
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGEST: gi|218505280|gb|FG952910.1|FG952910
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
EST: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAG GTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
genomic: TGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatactt ... taccgtctagGTTATGTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGTGACTACCACTACTCACAAGTCACTCCGTGGACCACGTGGAGCCATGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGgtatatacttgagcagaacaatagcaagatagtagcgtagggtgttggtactgtttcttctccatcctgtgactctgtgagcttcaaaaaaataaaaatgcctaatgaccctctaccgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG