1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGCTGGTCAAAATGGTCACTCAAAGATATCCGATAATGCTGGTTTTCATGAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAGgtaatcatgattctgtaccttgacaatctatttcgtactttaattctgatgtctacctgttggtagctgacgctgtagctcatgagatatagtatgatgt...
species | Oryza sativa |
transcript | LOC_Os03g52700.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAG CTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTCEST: gi|89194811|gb|CI003275.1|CI003275
genomic: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAGgtaatcatga ... tcatgtgcagCTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTC
EST: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAG CTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTCEST: gi|58656190|gb|CK044870.1|CK044870
genomic: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAGgtaatcatga ... tcatgtgcagCTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTC
EST: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAG CTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTCEST: gi|88476947|gb|CI414218.1|CI414218
genomic: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAGgtaatcatga ... tcatgtgcagCTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTC
EST: CTAAAGAGAATGTTCTCAG CTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTCEST: gi|87021445|gb|CI274052.1|CI274052
genomic: CTAAAGAGAATGTTCTCAGgtaatcatga ... tcatgtgcagCTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTC
EST: GAGGTTCACATCCAGAAAGCAAAAGTACCTCCTAAAGAGAATGTTCTCAG CTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTC
genomic: GAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAGgtaatcatga ... tcatgtgcagCTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCTGGGAAAGGTGTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGGTCAAAATGGTCACTCAAAGATATCCGATAATGCTGGTTTTCATGAGGTTCACATCCAGAAAACAAAAGTACCTCCTAAAGAGAATGTTCTCAGgtaatcatgattctgtaccttgacaatctatttcgtactttaattctgatgtctacctgttggtagctgacgctgtagctcatgagatatagtatgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA