1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgttttcttctatcatcacaatttgaaaatagaatttagattggtgttcattctttacttgtatttttacag
species | Oryza sativa |
transcript | LOC_Os03g50480.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58695799|gb|CK084486.1|CK084486
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58693865|gb|CK082552.1|CK082552
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|45244957|gb|AB118181.1|AB118181
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58657583|gb|CK046263.1|CK046263
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58596192|gb|CK006720.1|CK006720
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|29664693|gb|CB660968.1|CB660968
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG -A---CTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58682481|gb|CK071168.1|CK071168
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|218492308|gb|FG946716.1|FG946716
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|15008682|gb|AU223070.1|AU223070
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58670270|gb|CK058956.1|CK058956
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58597742|gb|CK008270.1|CK008270
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|29689390|gb|CB685665.1|CB685665
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58604363|gb|CK014891.1|CK014891
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: GCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|58601534|gb|CK012062.1|CK012062
genomic: GCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAAEST: gi|12622980|gb|AU173193.1|AU173193
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
EST: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG GAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
genomic: TGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgtt ... atttttacagGAAGACTTTGGAGGGGGCCATCCAGATCCTAACCTCACCTATGCAAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAGgtaatttgttttcttctatcatcacaatttgaaaatagaatttagattggtgttcattctttacttgtatttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA