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ATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctgccctatataagtcaaagtaaaaacgctaagtttacaaatttttgaaggatgaattgcgaccctttatacacacctccatctacatgcaac...
species | Oryza sativa |
transcript | LOC_Os03g49520.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|86593399|gb|CI258039.1|CI258039
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|86494255|gb|CI136888.1|CI136888
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: GCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|29644393|gb|CB649400.1|CB649400
genomic: GCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|29667995|gb|CB664270.1|CB664270
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|29646298|gb|CB651305.1|CB651305
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|58598663|gb|CK009191.1|CK009191
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTGACTCAGTTTCAA
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctgccctatataagtcaaagtaaaaacgctaagtttacaaatttttgaaggatgaattgcgaccctttatacacacctccatctacatgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctcc