1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctgccctatataagtcaaagtaaaaacgctaagtttacaaatttttgaaggatgaattgcgaccctttatacacacctccatctacatgcaac...
species | Oryza sativa |
transcript | LOC_Os03g49520.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|86494255|gb|CI136888.1|CI136888
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: GCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|7332619|gb|AU085965.1|AU085965
genomic: GCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGANCAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|29684301|gb|CB680576.1|CB680576
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|66919194|gb|CX106042.1|CX106042
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAEST: gi|86593399|gb|CI258039.1|CI258039
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
EST: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG GCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
genomic: CTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctg ... aatgttgcagGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGgtattttctgccctatataagtcaaagtaaaaacgctaagtttacaaatttttgaaggatgaattgcgaccctttatacacacctccatctacatgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA