1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgacttgtacttaattatttcaaagttcaacttagcattgggtatatttgttgctgcacaatctgaacatgcatagaagaaagaatataaattg...
species | Oryza sativa |
transcript | LOC_Os03g49510.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|86885549|gb|CI318700.1|CI318700
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: AGAA-TTGATCTTGTTTTGCCAGCCACTTGAAG GTTCCCTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|33800166|gb|CF325947.1|CF325947
genomic: AGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|29685720|gb|CB681995.1|CB681995
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|29668306|gb|CB664581.1|CB664581
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|33798033|gb|CF324876.1|CF324876
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|33800688|gb|CF326214.1|CF326214
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|33800571|gb|CF326156.1|CF326156
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|16753360|gb|BM037739.1|BM037739
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: -CAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAEST: gi|702245|gb|D48536.1|D48536
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
EST: GCAGAAGGNGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG GTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
genomic: GCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgac ... ttattttcagGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgtagattgacttgtacttaattatttcaaagttcaacttagcattgggtatatttgttgctgcacaatctgaacatgcatagaagaaagaatataaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaaa