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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACGGAGTTCAGAAAAGTCCAGCAGTGgtatgtctttattttgttatttaagtatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g45410.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACGGAGTTCAGAAAAGTCCAGCAGTGgtatg------tcttta----ttttgttatttaagtatgcag----------------------------------------------------------
||||| |||||||| || || |||||||| |||||||| |||||||| ||||||||||| |||  ||| || |||||||      ||||||    |||   | ||| ||||   ||                                                          
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa

upper sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 8
-GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACGGAGTTCAGAAAAGTCCAGCAGTGgtatg-------tctttattttgttatttaagtatgcag------------------------------------------------------------
 || || |||||||| || || ||||||||||||||||| || ||||| || |||||||| |||  ||| || |||||||          || ||  ||| ||  || ||  |                                                             
GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaagcggctctttttcagttgttataggatatacatgttgtaatccctggactaggaatataatgaatcaatatcattgtctctattattttgt

upper sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACGGAGTTCAGAAAAGTCCAGCAGTGgtatgtctttattttgttatttaagtatgcag-----------------------------------------------------------------------------------------------------------
||||| |||||||| ||||| || |||||||||||||||||||| || || |||||| | ||   ||| || |||||||| |     ||||| ||| | |||||                                                                                                             
GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgttt---acttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatttgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag