1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAGTACTGTTCTTGGAGGAAGAATCTTTTCTCCCCCAGTTGTTTCTGGGGTTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacctttcaacccccatacccaccccttctgaattcttctatgctcttgcatatgttggcatttaccataaactttctaggtgtgccagacctgc...
species | Oryza sativa |
transcript | LOC_Os03g44900.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCEST: gi|88461701|gb|CI695545.1|CI695545
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATC
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAEST: gi|58684868|gb|CK073555.1|CK073555
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGA
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTCGTGGAAGEST: gi|88468945|gb|CI696953.1|CI696953
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAG
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACEST: gi|58590602|gb|CF988910.1|CF988910
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGAC
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTCGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGTACEST: gi|88381712|gb|CI682382.1|CI682382
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGTAC
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGTACEST: gi|88313396|gb|CI671509.1|CI671509
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGTAC
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACCEST: gi|58676955|gb|CK065642.1|CK065642
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACC
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTCGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGTACEST: gi|88349186|gb|CI678160.1|CI678160
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGTAC
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGEST: gi|88331342|gb|CI675672.1|CI675672
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGG
EST: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAGEST: gi|88587352|gb|CI705090.1|CI705090
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGACCTGAAATTTCTGCAGATCAAAGGGAGAAG
EST: TTCAATGGAGGCCTCAAAACACTGGTGGTTTGCAAAATCAAAGTGAAGCG GGCCAATTTTGTGGAAGA
genomic: TTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacct ... tgtattccagGGCCAATTTTGTGGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTACTGTTCTTGGAGGAAGAATCTTTTCTCCCCCAGTTGTTTCTGGGGTTCAATGGAGGCCTCAAAACACTGCTGGTTTGCAAAATCAAAGTGAAGCGgtaagtacctttcaacccccatacccaccccttctgaattcttctatgctcttgcatatgttggcatttaccataaactttctaggtgtgccagacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC