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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACTgtaagcttcctgctggaaattgtactccctttgttattctcttttcaaaaacttgtaaaatattggtactgtaatattccttattttcataatgtatatt...

Basic information

species Oryza sativa
transcript LOC_Os03g44200.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g44200.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G027857_T01 (Zea mays), 5'ss of exon 8
ATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACTgtaagcttcctgctggaaattgtactccctttgttattctcttttcaaaaacttgtaaaatattggtactgtaat--attccttattttcataatgtatatt---
|||||||||||| ||||||||||||||||||||||||| ||| ||||||||| || |  ||||||||||||||||||||| ||||| | || | ||||   |||     |||||||   |     | |||  || | || |||  |      |  ||  |   |    || ||    
ATACCGGATCAAGATTCACCCTATGGGAAGCTATCCAAGAGTCACAGACATCCACAATCATACATATGAACTgtaagctttctgctagcaaatttactttattt-----tctctttgagatgttctataatttagtagtcctgcgaacgggcctctagctgagttggttagatgact

upper sequence: LOC_Os03g44200.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G092112_T01 (Zea mays), 5'ss of exon 8
ATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACTgtaagcttcctgctggaaattgtactccctttgttattctctttt-caaaaacttgtaaaatattggtactgtaatattcc--ttattttcataatgtatatt--------------------------------------------------------------------------------------
|||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |  | || ||||||||||||||||||| ||||  | || ||||||   | | ||  |||||      |     | ||   || | || ||    |  |    ||   |  ||||| |  |||                                                                                      
ATACCGGATCAAGATTCACCCTATGGGAAGCTATCCAAGAGTCACAGACATCCAGAATAACACATATGAACTgtaagctttctgcaagcaaatgtact---tctatttctctctgagatgatggtctatagtttagtagtcctcactttcttaggttgagtctataattttcatttgcaaacttttttgccttagcactgtaccaggcagtgcaacttaatcatgcttgggatgttaataagacacactgttgatgttcag

upper sequence: LOC_Os03g44200.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G027857_T02 (Zea mays), 5'ss of exon 1
----------------------------ATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACTgtaagcttcctgctggaaattgtactccctttgttattctcttttcaaaaacttgtaaaatattggtactgtaat--attccttattttcataatgtatatt---
                            |||||||||||| ||||||||||||||||||||||||| ||| ||||||||| || |  ||||||||||||||||||||| ||||| | || | ||||   |||     |||||||   |     | |||  || | || |||  |      |  ||  |   |    || ||    
GCAATGCATTTCTTGAACATTTTCCTAGATACCGGATCAAGATTCACCCTATGGGAAGCTATCCAAGAGTCACAGACATCCACAATCATACATATGAACTgtaagctttctgctagcaaatttactttattt-----tctctttgagatgttctataatttagtagtcctgcgaacgggcctctagctgagttggttagatgact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33688292|gb|CF316531.1|CF316531
EST:     ATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACT                         GTTCGGTCCTGTGAATTTATTCTGGAGTACCCGATTTGACAAAGCCATGAC
genomic: ATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACTgtaagcttcc ... taatgttcagGTTCGGTCCTGTGAATTTATTCTGGAGTACCCGATTTGACAAAGCCATGAC
EST: gi|33807311|gb|CF329536.1|CF329536
EST:     ATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACT                         GTTCGGTCCTGTGAATTTATTCTGGAGTACCCGATTTGACAAAGCCATGAC
genomic: ATGGGAAGCTATCCAAAAGTTACAGACATCAACCAAAATACATATGAACTgtaagcttcc ... taatgttcagGTTCGGTCCTGTGAATTTATTCTGGAGTACCCGATTTGACAAAGCCATGAC