1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCAAATACAAGGCATTATCTTCCAGGAAGCAGTGATCCTCATGCCAGTGGTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatgatgttcctttttacttcttttgtaacacaccgaaatttgtactgacatatcaattatccaacag
species | Oryza sativa |
transcript | LOC_Os03g17980.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|89186738|gb|CI052151.1|CI052151
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: ATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|38477992|gb|CF962125.1|CF962125
genomic: ATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: TTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGTGACTTCAG TCAGGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAACAGGCACTTCEST: gi|29672731|gb|CB669006.1|CB669006
genomic: TTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTG-GACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAA-AGGCACTTC
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|5038573|gb|AU070683.1|AU070683
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|29673828|gb|CB670103.1|CB670103
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|38483178|gb|CF966980.1|CF966980
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTC-TGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|29616520|gb|CB621532.1|CB621532
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|2317410|gb|C22464.1|C22464
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: CCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|218478287|gb|FG959067.1|FG959067
genomic: CCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|29663427|gb|CB659702.1|CB659702
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|218493226|gb|FG956765.1|FG956765
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|29614996|gb|CB620009.1|CB620009
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|66915430|gb|CX102278.1|CX102278
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAGCCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|218504457|gb|FG953019.1|FG953019
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAEST: gi|11025963|gb|AU162564.1|AU162564
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: TTTNCGCCCACATTANCCTGTTGAAANGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCACCCTCGCGAGATAATGATTGAGGTCCTAAAGNCACTTCAAEST: gi|29672696|gb|CB668971.1|CB668971
genomic: TTTGCGCCCACATTATCCTGTTGAAA-GAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
EST: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAG TCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
genomic: GTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatg ... tatccaacagTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAATACAAGGCATTATCTTCCAGGAAGCAGTGATCCTCATGCCAGTGGTTTGCGCCCACATTATCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGgttttgcatgatgttcctttttacttcttttgtaacacaccgaaatttgtactgacatatcaattatccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA