1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtgatcatactcatttgagttcacgcacaatgtcattctgttcttagttatcaaatgtttgtccacagaaataaaaaaaatattccatgatctttttgcatcag
species | Oryza sativa |
transcript | LOC_Os03g17930.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|88955373|gb|CI091465.1|CI091465
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|38479504|gb|CF963613.1|CF963613
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|86436064|gb|CI107297.1|CI107297
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: GAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|88219408|gb|CI218968.1|CI218968
genomic: GAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|29639434|gb|CB644443.1|CB644443
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|86499080|gb|CI141713.1|CI141713
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: TCACCAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|58675688|gb|CK064375.1|CK064375
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGTEST: gi|88263669|gb|CI366570.1|CI366570
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
EST: AGAT-GAAAAG ATGGTGAACGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGEST: gi|86425721|gb|CI070818.1|CI070818
genomic: AGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAA-GCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAG
EST: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG ATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
genomic: TCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtga ... tttgcatcagATGGTGAAGCTTATAAAGGATCTAAAGAAGGATAATGAATTCATGAAGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAGgtacgagtgatcatactcatttgagttcacgcacaatgtcattctgttcttagttatcaaatgtttgtccacagaaataaaaaaaatattccatgatctttttgcatcag
- - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - GATGGA