1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTTGATCAGGATGACTGGGTTCACTATGCTAAGATGACCGAAGAAATTGGAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttacttgctaatcatatgacttatatactgcttttttcagtttccttgttggcttcaatattcaaaccaatttgacttgcag
species | Oryza sativa |
transcript | LOC_Os03g14450.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|287175|gb|D15980.1|D15980
genomic: GATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: AGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86525380|gb|CI165586.1|CI165586
genomic: AGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|88219213|gb|CI220486.1|CI220486
genomic: GTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: TTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|89184182|gb|CI046747.1|CI046747
genomic: TTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|27576854|gb|CA999548.1|CA999548
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86854613|gb|CI258906.1|CI258906
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: AGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|5900716|gb|AU078371.1|AU078371
genomic: AGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|25799533|gb|CA755494.1|CA755494
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTGGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|29678594|gb|CB674869.1|CB674869
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|9864951|gb|AU100701.1|AU100701
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|8528267|gb|AU093082.1|AU093082
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|88974238|gb|CI019911.1|CI019911
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86535052|gb|CI175258.1|CI175258
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: TTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86430895|gb|CI083318.1|CI083318
genomic: TTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: ACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|87024296|gb|CI257037.1|CI257037
genomic: ACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|88841649|gb|CI080905.1|CI080905
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: CCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|89184770|gb|CI048326.1|CI048326
genomic: CCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86251762|gb|CI018954.1|CI018954
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCGACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|33810063|gb|CF330919.1|CF330919
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86435388|gb|CI106621.1|CI106621
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: TCCTGGTCACCAACCCAACT AGGGTAGCCAAGGCAGTTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86415101|gb|CI069504.1|CI069504
genomic: TCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: ACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|89197240|gb|CI051970.1|CI051970
genomic: ACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|89175061|gb|CI041139.1|CI041139
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|218503770|gb|FG954179.1|FG954179
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|568037|gb|D38872.1|D38872
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: AGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86436429|gb|CI118151.1|CI118151
genomic: AGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: CCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|86594831|gb|CI258085.1|CI258085
genomic: CCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACGCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|325493849|gb|JG458373.1|JG458373
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCACGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAATGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAGEST: gi|2797284|gb|AA750578.1|AA750578
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
EST: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGEST: gi|8528193|gb|AU093008.1|AU093008
genomic: GAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGG
EST: GTTGGAGATGATCTCCTTGTCACCAACCCAACT AGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
genomic: GTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttact ... tgacttgcagAGGGTAGCCAAGGCAATTAAGGACAAGGCCTGCAATGCTCTTCTCCTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGATCAGGATGACTGGGTTCACTATGCTAAGATGACCGAAGAAATTGGAGATCAAGTGCAGATTGTTGGAGATGATCTCCTTGTCACCAACCCAACTgtatgttacttgctaatcatatgacttatatactgcttttttcagtttccttgttggcttcaatattcaaaccaatttgacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG