1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATCCTCCTTCTCCTCGCTTGACCAAGGATGGAAAGCAGGAAAGTGCAGTTCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacatttcttgttctgcatgtaccttctgctgctttcagttgatttgtgtacagataatacaaataatgtgtccccaacttttcaaaaccttgcag
species | Oryza sativa |
transcript | LOC_Os03g14260.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCTEST: gi|29635728|gb|CB640737.1|CB640737
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
EST: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCTEST: gi|58598098|gb|CK008626.1|CK008626
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
EST: TCTTGTTGATAAGGGTGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCTEST: gi|58653430|gb|CK042110.1|CK042110
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
EST: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCTEST: gi|29628227|gb|CB633238.1|CB633238
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
EST: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCTEST: gi|88576067|gb|CI670212.1|CI670212
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
EST: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCTEST: gi|58658144|gb|CK046824.1|CK046824
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
EST: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAG GATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
genomic: TCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacat ... aaccttgcagGATTATCTGAACTTACCTTCGACCTACGACCTGAAATCAGGAAAAGTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCTCCTTCTCCTCGCTTGACCAAGGATGGAAAGCAGGAAAGTGCAGTTCTTGTTGATAAGGATGATACTATACACTTTTGGTTTCCTTTATTAGCAGgtaaccacatttcttgttctgcatgtaccttctgctgctttcagttgatttgtgtacagataatacaaataatgtgtccccaacttttcaaaaccttgcag
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