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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatccttttagattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt...

Basic information

species Oryza sativa
transcript LOC_Os03g13970.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G180820_T01 (Zea mays), 5'ss of exon 2
-------------------------------CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatcctttt----agattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt
                               || ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||||| |||||||| | || | |    |       || |   ||  ||   ||  ||    |||  ||    | |   ||    ||   | | |  |   || |    ||   
TTTATTAGCCCTTTTATGTGTAAAATAACAACTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaat---gaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G078663_T03 (Zea mays), 5'ss of exon 3
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatcctttt----agattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt
|| ||||||||||| |||||||| || ||| | |||||||||||||||||||||||  | ||||| |||||||| | || | |    |       || |   ||  ||   ||  ||    |||  ||    | |   ||    ||   | | |  |   || |    ||   
CTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaat---gaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 9
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctc----tatccttttagattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt
|| ||||||||||| |||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||||||| | || |     || |  |  || |     ||| |   | |  |   |||  ||    | |   ||    ||   | |    |   || |    |    
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctttttcgggtaacactgaaggtccgccagtatttgtgatgcaatgaaattcatgttgcctctagatgatagcattgatcagcttcaccttga----

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 9
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctcta--tccttttagattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt
|| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||||| |||||||| | || | |   | |   |  |    | ||| |   | |  |   |||  ||    | |   ||    ||   | | |  |   || |    ||   
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctcagtattg-tgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G007884_T01 (Zea mays), 5'ss of exon 4
-------------------------------CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatcctttt----agattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt
                               || ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||| | |||||||| | || | |    |       || |   ||  ||   ||  ||    |||  ||    | |   ||    ||   | | |  |   || |    ||   
TTTATTAGCCCTTTTATGTGTAAAATAACAACTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGAGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaat---gaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 9
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatccttttagattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacat-tagactttctattgtccctcgtacctt
|| ||||| |||||||| |||||||| ||||| |||||||||||||| ||  ||||    |||   |||||| | |||  | |||        ||  ||| |||| |   |||  |   |     || | || |   | ||| |         ||  |   | | |  | 
CTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgggtttgacaaaaatcttttattgaagatttcaatgggggcatgtttgacaaaaatctttttttgaagat-

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 9
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatccttttagattgttgagtttcaatcaaa---cttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt
|| ||||| |||||||| ||||| || ||||| |||||||||||||| || |||||    |||   |||||| | |||  | |||        ||  |||||||| ||   ||   |||||||  | | |     |  ||    ||| | ||    |   |     || |  
CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatat--ttaaatttagcttcacctagattagcc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218485696|gb|FG969920.1|FG969920
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAAATCAGAC
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAA-TCAGAC
EST: gi|5055982|gb|AU075361.1|AU075361
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|218483651|gb|FG955547.1|FG955547
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAAACAAGCCAGAAGATGAGAAAGAA-TA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAA-GAAATA
EST: gi|33657882|gb|CF280496.1|CF280496
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88471377|gb|CI408648.1|CI408648
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86491666|gb|CI134299.1|CI134299
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86834663|gb|CI340780.1|CI340780
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|33801681|gb|CF326712.1|CF326712
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88247152|gb|CI247001.1|CI247001
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88840672|gb|CI080126.1|CI080126
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88217668|gb|CI217517.1|CI217517
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88971753|gb|CI388991.1|CI388991
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|44670518|gb|CR283952.1|CR283952
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAAACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|58675750|gb|CK064437.1|CK064437
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAAACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|29678148|gb|CB674423.1|CB674423
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88411406|gb|CI518930.1|CI518930
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88840095|gb|CI079549.1|CI079549
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88841708|gb|CI080964.1|CI080964
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86412758|gb|CI067163.1|CI067163
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86537394|gb|CI177600.1|CI177600
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|89166075|gb|CI103165.1|CI103165
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88217103|gb|CI216952.1|CI216952
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88262482|gb|CI366256.1|CI366256
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88830946|gb|CI079380.1|CI079380
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86413292|gb|CI067697.1|CI067697
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88258169|gb|CI360755.1|CI360755
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88460344|gb|CI529419.1|CI529419
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86428134|gb|CI073231.1|CI073231
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAGGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88903289|gb|CI088827.1|CI088827
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86486706|gb|CI129339.1|CI129339
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86419054|gb|CI053855.1|CI053855
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88828527|gb|CI073397.1|CI073397
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88245959|gb|CI245808.1|CI245808
EST:     ATGACCCCTCTGTGAAAGAATTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|6449564|gb|AU081506.1|AU081506
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88262261|gb|CI365837.1|CI365837
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|33654617|gb|CF277231.1|CF277231
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGCCAAATCAGCCAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 42

CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTT




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