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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGATTTAGCTACATATCAGAGGTGGACCACAAAAGATACTGTCGCAGTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAGgtacggattttcagtgtagtaaacgaactataatattgtaatacatggggcaataataacaaatactaactgttgttccaactttttgtcaataag

Basic information

species Oryza sativa
transcript LOC_Os03g13790.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13790.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G085427_T02 (Zea mays), 5'ss of exon 10
AAGAAGATTTAGCTACATATCAGAGGTGGACCACAAAAGATACTGTCGCAGTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAGgtacggattttcagtg-tagtaaacgaactataatattgtaatacatggggcaataataacaaatactaactgttgttccaactttttgtcaataag----
|||| ||||| |||||||||||||||||||| |||| ||||||||| ||||| ||||| || || ||||||||||||||||| |||||||| || ||||||||   | ||||  |  | |  |   |   | ||  || |  |     |  |    |  | |  | |  |   ||     ||      |  || |      
AAGAGGATTTGGCTACATATCAGAGGTGGACAACAAGAGATACTGTTGCAGTAGCTGATGTGTTTCTTTCTGTGAATAGCCCGTCTGTTTTCCGTTTAAGgtatataatttctctaattgataggaagtcacaacctttttttttcgtgaacgcacaggagagctgcacatcattaaattaagagaa-gaaaacagtccaa

upper sequence: LOC_Os03g13790.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G152319_T02 (Zea mays), 5'ss of exon 10
AAGAAGATTTAGCTACATATCAGAGGTGGACCACAAAAGATACTGTCGCAGTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAGgtacggattttcagtg-tagtaaacgaactataatattgtaatacatggggcaataataacaaatactaactgttgttccaactttttgtcaataag
|||| ||||| |||||||||||||| ||||| |||| ||||||||| ||||| ||||| || || ||||||||||||||||| |||||||| || ||||||||   | ||||  || | |  |   |     ||  |  |    ||   |   ||    |   || |||| | ||||  |||| ||||||   ||||
AAGAGGATTTGGCTACATATCAGAGATGGACAACAAGAGATACTGTTGCAGTCGCTGATGTGTTTCTTTCTGTGAATAGCCCTTCTGTTTTCCGTTTAAGgtatataatttctctgatcgatagaaagtcgcaacctaatgggtcagttgtagatgcataatgatgctaatt-ttgtgtcaacattttgttgttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29644350|gb|CB649357.1|CB649357
EST:     GTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAG                         GTATGGTTGGTTTTCCCTTGCTGAGCTTGAAGCAGGCGTAAGTGAAATATC
genomic: GTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAGgtacggattt ... tgtcaataagGTATGGTTGGTTTTCCCTTGCTGAGCTTGAAGCAGGCGTAAGTGAAATATC
EST: gi|32948415|gb|BP184987.1|BP184987
EST:     GTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAG                         GTATGGTTGGTTTTCCCTTGCTGAGCTTGAAGCAGGCGTAAGTGAAATATC
genomic: GTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAGgtacggattt ... tgtcaataagGTATGGTTGGTTTTCCCTTGCTGAGCTTGAAGCAGGCGTAAGTGAAATATC
EST: gi|66923617|gb|CX110465.1|CX110465
EST:     GTGGCTGACGTTTTCCGTTCTGTGAATAGCCCATCTGTTTTTCGATTAAG                         GTATGGTTGGTTTTCCCTTGCTGAGCTTGAAGCAGGCGTAAGTGAAATATC
genomic: GTGGCTGACGTTTTCCTTTCTGTGAATAGCCCATCTGTTTTTCGATTAAGgtacggattt ... tgtcaataagGTATGGTTGGTTTTCCCTTGCTGAGCTTGAAGCAGGCGTAAGTGAAATATC