1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACTGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGgtgattttctacaatctttgtttcttctgcagttcataaattatatatatgcggctactcattttaactgactagcctgtatttag
species | Oryza sativa |
transcript | LOC_Os03g08570.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAG TTGATATCTTGEST: gi|58669189|gb|CK057875.1|CK057875
genomic: TACTGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGgtgattttct ... ctgtatttagTTGATATCTTG
EST: TACTGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAG TTGATATCTTGAAGCTTCTTGTACCTCAAGAAGTGGAAAGAAATATCTTAT
genomic: TACTGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGgtgattttct ... ctgtatttagTTGATATCTTGAAGCTTCTTGTACCTCAAGA-GTGGAAAGAAATATCTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACTGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGgtgattttctacaatctttgtttcttctgcagttcataaattatatatatgcggctactcattttaactgactagcctgtatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG