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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCTTTGTGATAAGAAGAAGAAAACGCAGAGCGGCATTGGAAGAACATTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAGgtctgtttgcctgatgccttgctgatcatcatactttagttttgttatatattttgtacaattatctgaaaatttgcttctgaaaatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g08550.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08550.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G330907_T01 (Zea mays), 5'ss of exon 10
GCATTCTTTGTGATAAGAAGAAGAAAACGCAGAGCGGCATTGGAAGAACATTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAGgtctgtttgcctgatgccttgctgatcatcatactttagttttgttatatattttgtacaattatctgaaaatttgcttctgaaaatgtgcag---------
||||| ||| | || | ||||||||||| || |||     |||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| |||  ||| || ||||| ||         ||| |||| || | | |       ||| |  |||||| |||| || ||||| |     | | ||          
GCATTTTTTCTAATCAAAAGAAGAAAACACAAAGCTATTATGGAAGAACAATTTGAACAGCATCAGCCGTTCACTTCCTTCCCTTCAAATGAAGTTAACGgtaagttagcttgatgtct--------gtcacacttgagatgtttccacagctttatctaattatgtgaacatctgcttatactgttatacacatgttgcag

upper sequence: LOC_Os03g08550.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G153393_T01 (Zea mays), 5'ss of exon 10
GCATTCTTTGTGATAAGAAGAAGAAAACGCAGAGCGGCATTGGAAGAACATTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAGgtctgtttgcctgatgccttgctgatcatcatactttagttttgttatat--attttgtacaattatctgaaaatttgcttctgaaaatgt----gcag
|||||  ||||||| | |||||||||||||| ||| ||  || |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||  || ||||| ||  |        | |||| ||   ||||        ||| |  ||| || |||| || ||||| |  | ||||    ||||
GCATTTCTTGTGATCAAAAGAAGAAAACGCAAAGCTGCTATGAAAGAACATTTTGAACAGCACCAGCCATTCACTTCCTTCCCTTCAAATGAAGTTAAAGgtcagtgggcttgatgactcac--------acacttgagagatgtttccgcagctttatctaataatgtgaacatctgcttatacacatgttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800350|gb|CF326044.1|CF326044
EST:     TTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAG                         ACATGAAGCCTATTGAAGAGTCTACTACAATAGATGTAGAGTCTTTGCCAT
genomic: TTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAGgtctgtttgc ... aaatgtgcagACATGAAGCCTATTGAAGAGTCTACTACAATAGATGTAGAGTCTTTGCCAT
EST: gi|58661405|gb|CK050085.1|CK050085
EST:     TTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAG                         ACATGAAGCCTATTGAAGAGTCTACTACAATAGATG
genomic: TTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAGgtctgtttgc ... aaatgtgcagACATGAAGCCTATTGAAGAGTCTACTACAATAGATG
EST: gi|58658124|gb|CK046804.1|CK046804
EST:     TTTTGAACAGCACCAGACATTCACTTCGTTCCCTTCAAACGAAGTTAAAG                         ACATGAAGCCTATTGAAGAGTCTACTACAATAGATGTAGAGTCTTTGCCAT
genomic: TTTTGAACAGCACCAGCCATTCACTTCGTTCCCTTCAAACGAAGTTAAAGgtctgtttgc ... aaatgtgcagACATGAAGCCTATTGAAGAGTCTACTACAATAGATGTAGAGTCTTTGCCAT