1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctctttgcttataaacatgtaaaaatgtatgagagatgtaccctgaactaataagatccctgtgtacag
species | Oryza sativa |
transcript | LOC_Os03g08550.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACA AACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTAEST: gi|29644649|gb|CB649656.1|CB649656
genomic: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctc ... ctgtgtacagAACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTA
EST: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACA AACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTAEST: gi|29624948|gb|CB629959.1|CB629959
genomic: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctc ... ctgtgtacagAACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTA
EST: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACA AACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCAEST: gi|58661405|gb|CK050085.1|CK050085
genomic: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctc ... ctgtgtacagAACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCA
EST: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACA AACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTAEST: gi|58658124|gb|CK046804.1|CK046804
genomic: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctc ... ctgtgtacagAACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTA
EST: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACA AACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTAEST: gi|29681108|gb|CB677383.1|CB677383
genomic: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctc ... ctgtgtacagAACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTA
EST: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACA AACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTA
genomic: CATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctc ... ctgtgtacagAACTGACGGAAATTCTTGGAGTAATGGACCAGCACCACCACCTCCACCGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAAGATAAACAATCTACAgtgagttctctttgcttataaacatgtaaaaatgtatgagagatgtaccctgaactaataagatccctgtgtacag
- - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG