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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag

Basic information

species Oryza sativa
transcript LOC_Os03g02150.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 9
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag
 |||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| |||| || |||||||||| ||| | |                      |  |||  || |||  ||  | | ||                  || |||  |||||     ||||||   ||||| || |    |  |||| ||| | | ||||| || ||  ||| |  |||  ||||  |||
CATGCATCTGGATGCTGAGAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTCGGTCTGgtaa-ttgcatt----------------------tcttattaatatttacttaatgcctt------------------ttgctggcagtct-----tgcttc---cgcatcaagttgt-gcaagtgtaaaatctaccatattgagacagtaatcgatccatcttt-cag

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 10
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag
 |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| |||| ||||||||||||| ||| | |                      |  |||  ||||||  ||| |       |||    |        || |||  |||||     |||||   || ||| || |    |  |||| | | |||  |||| ||  |  ||| |  |||  ||||  |||
CATGCATCTGGATGCTGAAAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTTGGTCTGgtaa-ttgcatt----------------------tcttattaatgtttacttgat-------taacacctt-------ttgctggcagtct-----tgctt---tcacatcaagttgt-gcaagtgtacaatttatcatattgaaacagtaatcgatccatcttt-cag

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacag-taatactgtttgattctatatatgtttttttggtacttt-----ggtaatgtttcgttcacattcctgatagtctataa-atgcttcattcgcatt----aaatccccgtgagtgaaaactttgccataatgtgatg---------gtatttcatctgtcttcacag-----
 |||||||||||||||||||| ||||||||||| || || |||||||||||||| || |||||||| || || |||||||| ||| | ||||||||  |||||||| |        |   | | |  |  | |   ||| |   |||| ||||  | || |     ||         | |  ||| ||  ||  |||  |  |   ||||||  |||     ||  |   |||   |      ||| |||||||  |||          ||    || ||   | |  |     
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatt-tctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 9
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacag-taatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag
 |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||| || || |||||||| ||| | ||||||||  ||||||||||       ||   | | |  |||| |   ||| |   |||||||||  |  |||  |  | | |  || |       |  |     |  ||||                                                                      
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAGTGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagttggggggcacacttgattaatctgtatttctcttttcttgtttttttttttttttttttttttctgtttgaagggaggggcaaggattgcatgc----------------------------------------------------------------------

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttg-gtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag
 ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||  |||| ||    |  |||||    ||  |||   ||  ||||    |   |     ||| |||| | | || || ||     || || ||     ||  ||  ||       |||| |                                                       
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgag----atcttgca----taccacttcctgcatctaagcctagctgg--agtagtttgtgaagtggttggtg---gtttctcatg----atgcattttttgacaaaattacag------------------------------------------------------

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 9
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag
 ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||  |||| ||    |  |||||       |||    |   |  || || | ||   | | ||      | |  || ||| |  |   || ||||  || | ||   | ||| |||   || |  ||   ||| ||| ||||                                 
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgag----atcttgca-------tacccacttcctgcatctaagcttagctagaac------agtaatttgtt-aagtatttggtagtgcatta-tgtggc-ttctcat--gatgcttgt---tgacaacattgcag-------------------------------

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 9
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttggtaatgtttcgttcacattcctgatagtctataa-atgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgat--ggtatttcatctgtctt--cacag
 |||||||| ||||||||||| || |||||||| || || || ||  | |||||||| |||||||| || || || ||||||||  | ||||||||| |||||||||  |       |  ||  || | | || |||  | ||||| ||     ||  |    |||| ||    || || |    | |  |  |  ||| |  | |   | |  ||    || | ||    || |   |     ||||  |  ||||    |    |    |||
CATGCATCTGGATGCTGAAAAAGAAATGATGTCTCAATGTGTTGCCTTGCTTGGGAAATTTATTGCTGTACGAGAGCCAAATATACGATATCTTGGTTTGgtaagttacag-----gatggttcta-tctgtgcttccgt-tatgtcttcacc-tatatc--caatgattaaagcatat-caaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcag