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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttttatgacttgaattcttttttgtcatcaccctgaagacataatgctttttatgttgcttggttgaaattttaatttgatttttcaattatt...

Basic information

species Oryza sativa
transcript LOC_Os03g01150.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01150.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G374779_T03 (Zea mays), 5'ss of exon 9
GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttttatgacttgaattcttttttgtcatcaccctgaa--gacataatgctttttatgttgcttggttgaaattttaatttgatttttcaattatt-
| |||||||||||||||||| ||| | |||||||||||||||||| |     |   || |  ||||| |||  |  |  |||   |||||  | || | |   |    ||| || | |||| | ||   || |||  || | 
GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTgtgagtataacgaggaatgcac-cttttatgtagtttcgttgacatgacatgctactctattattcttatggatgtacttttgagtttgcttatca--tactg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29619263|gb|CB624275.1|CB624275
EST:     GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT                         GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: gi|29661632|gb|CB657907.1|CB657907
EST:     GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT                         GATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAAT
EST: gi|58585728|gb|CF984036.1|CF984036
EST:     GCGCGTCTTGCACCTAGTGGTTACATGAAAATCCCAACT                         GATATTTCAGATTATTTAAAGGGTTGTAGATTTNCTTCCAAAGCTTAACAA
genomic: GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttt ... tgcttttcagGATATTTCAGATTATTTAAAGGGTTGTAGATTT-CTTCCAAAGCTTAACAA