1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CATTTAGATCTTGAACCTGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCAgtaggtggtcctccttgattgatgtatgctgattgaagatagtgatgataccactgatccttgtcctgataactttcttatttcag
species | Oryza sativa |
transcript | LOC_Os02g58590.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGCGCACTGAAAGGGCCAGGAGAGT-GATAGCATATTACAAGATAGCCA AACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGCEST: gi|29626072|gb|CB631083.1|CB631083
genomic: GTGCGCACTGAAAGG-CCAGGAGAGTTGATAGCATATTACAAGATAGCCAgtaggtggtc ... cttatttcagAACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGC
EST: TGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCA AACATTACAAATGGGCCCTGGATGAGCTATTCATCAAACACAACTTTGCGCEST: gi|33797216|gb|CF324472.1|CF324472
genomic: TGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCAgtaggtggtc ... cttatttcagAACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGC
EST: TGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCA AACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGCEST: gi|29681006|gb|CB677281.1|CB677281
genomic: TGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCAgtaggtggtc ... cttatttcagAACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGC
EST: TGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCA AACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGC
genomic: TGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCAgtaggtggtc ... cttatttcagAACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTAGATCTTGAACCTGTGCGCACTGAAAGGCCAGGAGAGTTGATAGCATATTACAAGATAGCCAgtaggtggtcctccttgattgatgtatgctgattgaagatagtgatgataccactgatccttgtcctgataactttcttatttcag
- - - - - - - - - - - - - - - - - AGGAGA