1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGACTGGTTTGTTGCATGCTGATCCTCATCCTGGGAATTTGCGTTATACACCTGAAGGTCGTGTCGGgttagtgttaatttatctttttatgtacgctctataagaaaatgtcttcttactataatcagcagaatcatgttatacagtgggtctgatgtttttgtaatggttttcctctgtcattctccctttgagcaatagtaacaccttcctaattatgttag
species | Oryza sativa |
transcript | LOC_Os02g56200.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTTATACACCTGAAGGTCGTGTCGG GTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGCEST: gi|86888302|gb|CI301994.1|CI301994
genomic: GTTATACACCTGAAGGTCGTGTCGGgttagtgtta ... attatgttagGTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGC
EST: TATACACCTGAAGGTCGTGTCGG GTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGCEST: gi|88327786|gb|CI657830.1|CI657830
genomic: TATACACCTGAAGGTCGTGTCGGgttagtgtta ... attatgttagGTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGC
EST: GCTGATCCTCATCCTGGGAATTTGCGTTATACACCTGAAGGTCGTGTCGG GTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGC
genomic: GCTGATCCTCATCCTGGGAATTTGCGTTATACACCTGAAGGTCGTGTCGGgttagtgtta ... attatgttagGTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGACTGGTTTGTTGCATGCTGATCCTCATCCTGGGAATTTGCGTTATACACCTGAAGGTCGTGTCGGgttagtgttaatttatctttttatgtacgctctataagaaaatgtcttcttactataatcagcagaatcatgttatacagtgggtctgatgtttttgtaatggttttcctctgtcattctccctttgagcaatagtaacaccttcctaattatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG