Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctgtttgctgttacag

Basic information

species Oryza sativa
transcript LOC_Os02g54340.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 9
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctg-tttgctgttacag
||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| |||||| | | |     |||||    |||   | |  || ||   | |    ||| ||    |  | |  || | || |       ||          ||||||||| |  | || |||| |  | |||
GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttg-----ctttgtggtttcag-cagaatgtttgtgtttctgcttgattcaattgattt--acttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccag

upper sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctgtttgctgttacag
||| |  | || || ||||| ||||| || ||  | ||||||||||||||| | ||||||||||| || ||  ||||||| || ||||| ||||||||||||||    |   |  |  |     |||| |   ||  | ||       ||| | ||| | |     |  |             | ||  | |||  ||||| |   | || ||| |   | |||
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaa-atacttatctgaagggcacgttgtctttgtatactctcca--ttgatggttttggctgttattttgg---------gttcttggtttt--tctcata---ttctttttccacattcag

upper sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 9
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttg--aaacttcgt--tctgggtggtttcttctagatttg---tttgttatagtctccacctcaaaag-cggataatgctaagctttgttctcacaaactcctgtttgctgttacag
||  | || |||||||| |||||||| ||||| || |||||||||   || || || || ||||||||||| ||||||||||| ||||| || ||||| |||             |||  ||  || ||  || |   ||||   ||    |||    | || |||  |||  |    |   | |||||||   |    |                                
GAAAGTCGAACCCAAATTTTCAAGATTCATACTCGGACCATGAACACAGAACGAGACATTCGTTTCGAGCTTCTGGCTCGCCTTTGCCCTAATTCAACAGgttctgattcttttcttgctaatttttgtattcagatcggttgtatccgtgtttagaatatgatattttcttgaatgtagctgtcggataagattggaat--------------------------------

upper sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 9
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctgtttgctgttacag
||  || | || || || |||||||| || ||  | ||||||||||| |||||||| ||||| |||||| |||| |||||| | ||||| ||||| || ||||| |         | |    |      | | ||||||  |||         | |    ||  ||||         || |      || ||||                              
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCTCGCTTATGCCCAAACTCGACCGgtaagt-------tctcgtgcttatacggtagatggttttctct-------cctctctcggtaaccacgct----ttggtttgcttgaatctttag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180582|gb|CI044861.1|CI044861
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|29622230|gb|CB627241.1|CB627241
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86846539|gb|CI280856.1|CI280856
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86427651|gb|CI072748.1|CI072748
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88993079|gb|CI108707.1|CI108707
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|33811457|gb|CF331617.1|CF331617
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|66912920|gb|CX099768.1|CX099768
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88991224|gb|CI108611.1|CI108611
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88506200|gb|CI433706.1|CI433706
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88218140|gb|CI217989.1|CI217989
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88515458|gb|CI443112.1|CI443112
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88848783|gb|CI087305.1|CI087305
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86540292|gb|CI180498.1|CI180498
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88971579|gb|CI017893.1|CI017893
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86540330|gb|CI180536.1|CI180536
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86848818|gb|CI295658.1|CI295658
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|58673769|gb|CK062455.1|CK062455
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88982623|gb|CI028036.1|CI028036
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88518037|gb|CI445590.1|CI445590
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88905760|gb|CI002098.1|CI002098
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88518123|gb|CI445777.1|CI445777
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88980874|gb|CI021004.1|CI021004
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|15856297|gb|BI809109.1|BI809109
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|89196234|gb|CI397236.1|CI397236
EST:     CGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAAGCTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGC
genomic: CGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAA-CTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGC
EST: gi|86873335|gb|CI341560.1|CI341560
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86490075|gb|CI132708.1|CI132708
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88474442|gb|CI411713.1|CI411713
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86427640|gb|CI072737.1|CI072737
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88974022|gb|CI002684.1|CI002684
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86540282|gb|CI180488.1|CI180488
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86415012|gb|CI069415.1|CI069415
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86593357|gb|CI257997.1|CI257997
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|55436033|gb|CV731154.1|CV731154
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|313080019|gb|HO213339.1|HO213339
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88474149|gb|CI411420.1|CI411420
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86526803|gb|CI167009.1|CI167009
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|25803583|gb|CA759544.1|CA759544
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88504294|gb|CI431800.1|CI431800
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86541373|gb|CI181579.1|CI181579
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86536399|gb|CI176605.1|CI176605
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88507099|gb|CI434605.1|CI434605
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|86540331|gb|CI180537.1|CI180537
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|89194700|gb|CI117137.1|CI117137
EST:     GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
genomic: GCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCG
EST: gi|88974008|gb|CI002670.1|CI002670
EST:     CGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAAACTG                         GAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGC
genomic: CGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTC-AACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 74 (downstream exon)
Score: 34

GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaa ... gctgttacagGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCGCCCGACGGAAAACAGTGACTGAGAAGGACTTCCTTGATGCTGTAAACAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctgtttgctgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT