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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgtttccaatgtgcacatagcatggttattttttctaccaacttgtgactgtgacacgtataattataactatacctattctccgaaatctattg...

Basic information

species Oryza sativa
transcript LOC_Os02g52420.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g52420.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G101438_T02 (Zea mays), 5'ss of exon 9
GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgtttccaatg--tgcacatagcatggttattttttctaccaacttgtgactgtgacacgtataattataactatacct--attctccgaaatctattg
|||||||||||||||| |||||||  ||||| |||||||||||||||||||||  ||||||  |  ||| | |    |  | |  | |  |   || |  ||    |      |  |  | | | || |  |  |  ||  | || ||    
GAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAGgtacacctttccacagcttgcccgtgttctattaacctgtgattaaaattgctgctctttttctattgacctgtgattaaaatttcacactgtggaacct----

upper sequence: LOC_Os02g52420.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G101438_T03 (Zea mays), 5'ss of exon 8
----------------------------------------------------GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgtttccaatg--tgcacatagcatggttattttttctaccaacttgtgactgtgacacgtataattataactatacct--attctccgaaatctattg
                                                    |||||||||||||||| |||||||  ||||| |||||||||||||||||||||  ||||||  |  ||| | |    |  | |  | |  |   || |  ||    |      |  |  | | | || |  |  |  ||  | || ||    
TCTGCACCATATTAGGATGTGATATCTGTGCCAATGACTTCGAAATTTGCAGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAGgtacacctttccacagcttgcccgtgttctattaacctgtgattaaaattgctgctctttttctattgacctgtgattaaaatttcacactgtggaacct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88663432|gb|CI482070.1|CI482070
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|88662360|gb|CI467473.1|CI467473
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|88662872|gb|CI474688.1|CI474688
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|38482500|gb|CF966534.1|CF966534
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|313084050|gb|HO213833.1|HO213833
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|88661931|gb|CI462321.1|CI462321
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|86494445|gb|CI137078.1|CI137078
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         --CCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|29657570|gb|CB653845.1|CB653845
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|86841002|gb|CI335146.1|CI335146
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|86492814|gb|CI135447.1|CI135447
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCCAACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
EST: gi|88662988|gb|CI476281.1|CI476281
EST:     GAAACAATGAATGGGGCCGTATGACATTGAACCANACATTTACTATAG                         AGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT
genomic: GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgttt ... tttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACT