1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATCTACAAAGCATCAGAAACCAATAATAATGGTCACTGCATCCCAAGACTCTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcctactaatttgtgggtatgataactgcatcttacattatagttctatgaaataactatggagttatgcacag
species | Oryza sativa |
transcript | LOC_Os02g50360.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCT GGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGATEST: gi|58601138|gb|CK011666.1|CK011666
genomic: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcct ... ttatgcacagGGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGAT
EST: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCT GGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGATEST: gi|29677315|gb|CB673590.1|CB673590
genomic: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcct ... ttatgcacagGGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGAT
EST: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCT GGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGATEST: gi|88827251|gb|CI777816.1|CI777816
genomic: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcct ... ttatgcacagGGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGAT
EST: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCT GGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGAT
genomic: CTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcct ... ttatgcacagGGATTGATTGCCTTGCTCACTGCTGTTGATGCTCTCTCTCACCTTCATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTACAAAGCATCAGAAACCAATAATAATGGTCACTGCATCCCAAGACTCTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcctactaatttgtgggtatgataactgcatcttacattatagttctatgaaataactatggagttatgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT